FastQCFastQC Report
Wed 31 May 2023
EGAF00007951350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457839
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT20850.45540026079036516No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18220.3979564868873119No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18200.3975196521047792No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16390.3579861042855676No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT15290.3339601912462678No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12840.28044793038600907No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT12660.2765164173432145No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9330.20378342605151595No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9080.19832299126985686No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9050.19766773909605778No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8500.18565478257640788No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7770.16971031301396342No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7730.16883664344889798No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7590.1657787999711689No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7500.16381304344977166No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT7420.16206570431964076No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6740.1472133217135281No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6550.14306339127946724No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6530.1426265564969345No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6450.14087921736680362No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5830.12733733910828915No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5770.126026834760691No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5680.12406107823929372No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5600.12231373910916282No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA5580.1218769043266301No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5450.11903747824016739No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5220.11401387824104108No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5210.11379546084977471No Hit
GACGAAGGTTTCGGAGCCTACGTAGGTAGAACGCGGACCTTTAC5120.11182970432837744No Hit
CACGTTCTGAATCGGGCGGGATTGGGTCTGACGACCTTCGATGT4580.10003516519999389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)