FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414084
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26460.6390007824499377No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14770.35669091295485944No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10200.24632683223693744No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6830.1649423788410081No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6380.15407501859526085No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6220.15021106828566186No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5960.14393214903256343No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5740.13861921735686478No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5560.1342722732585659No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5210.12581988195631805No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5170.12485389437891829No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5090.12292191922411877No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4560.11012258382357204No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4150.10022121115522455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)