FastQCFastQC Report
Wed 31 May 2023
EGAF00007951353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414084
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34660.8370282358168875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26040.6288579128872404No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15160.366109291834507No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12500.30187111793742333No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11050.26685406825668223No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7130.17218728567150626No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6930.1673573477845075No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6800.1642178881579583No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5950.1436906521382135No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5900.1424831676664638No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5900.1424831676664638No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5240.12654437263936785No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5010.12098994406931926No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4880.11785048444277006No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4500.1086736024574724No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA4290.1036021676761237No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4240.10239468320437399No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG4220.1019116894156741No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)