FastQCFastQC Report
Sun 21 May 2023
EGAF00007951354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514564
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15840.3078334279117855No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15600.30316928506463725No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13210.2567221958784524No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT12850.24972598160773002No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12630.24545051733117748No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11350.22057508881305338No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10770.2093034102657784No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10310.20036380314207755No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9740.18928646388010043No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9480.1842336424623565No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8230.15994123180012593No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8200.1593582139442324No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7940.15430539252648845No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7690.14944691039404234No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7640.14847521396755312No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6010.11679791046400449No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5750.11174508904626052No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5650.10980169619328208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)