FastQCFastQC Report
Sun 21 May 2023
EGAF00007951355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514564
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24110.46855201685310277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20280.3941200705840284No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15350.29831080293219114No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13830.2687712315669188No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT13600.26430142800506834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13470.2617750172961964No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12400.24098071376932703No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11710.22757130308377577No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9600.18656571388593063No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9460.18384496389176078No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8660.16829782106793323No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8440.16402235679138066No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8440.16402235679138066No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8390.16305066036489144No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8050.15644312466476473No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6110.11874130331698293No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6050.11757526760519585No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5790.11252244618745191No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG5370.10436019620494244No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5260.10222246406666614No Hit

[OK]Adapter Content

Adapter graph