FastQCFastQC Report
Wed 31 May 2023
EGAF00007951358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440885
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14360.32570851809428764No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12910.29282012316136863No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11680.26492169159758217No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6250.1417603229867199No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6150.13949215781893237No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4930.11182054277192464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)