FastQCFastQC Report
Wed 31 May 2023
EGAF00007951362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474123
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC20300.42815893765963686No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG17570.37057894259506496No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG17270.3642514706099472No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17220.36319689194576094No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15200.3205919139126345No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15070.3178500093857501No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT14880.3138426104618422No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT13970.29464927877365155No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13490.28452532359746313No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11930.2516224692748506No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11330.23896752530461504No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT10880.22947631732693838No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9210.19425338994311603No Hit
CGGTTTGCCCCAACCGGTGCACTGCAGAACACCACCGCAAT9120.1923551483475807No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8760.18476218196543934No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8700.1834966875684158No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8460.17843470998032154No Hit
GCCGCAGTCACCGGTCTGGCAAGAACCACGGCCGGCGCCGT8140.17168540652952924No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT7640.16113961988766629No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7450.15713222096375837No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7350.15502306363538576No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC7140.1505938332458033No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6470.13646247914570692No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6270.13224416448896173No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5950.12549486103816943No Hit
CCAACCGGTGCACTGCAGAACACCACCGCAGTCGCCGGTCT5360.11305083280077112No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5180.10925434960970043No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5070.10693427654849058No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4820.10166138322755909No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGT4770.10060680456337279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)