FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474123
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT34130.7198553961735668No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG33540.7074113679361684No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23000.4851061855256969No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21580.4551561514628061No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC20360.42942443205666037No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC18050.3807028977712535No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC17000.35855674582334124No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15120.31890458804993643No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15010.31658451498872653No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC14810.31236620033198137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12770.2693393908331804No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC11180.23580378931205614No Hit
CGTCTGGACCGCGGTCAGACTTGGGTGATCAAC9610.2026900192566064No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9610.2026900192566064No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9290.1959407158058141No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8910.18792591795799826No Hit
TGGGCTGCGTCCACCCCGATCGGTGGCGGTCGT8190.17273998519371556No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG7800.16451427161306242No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7800.16451427161306242No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA7440.1569213052309211No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7050.14869559165026797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6270.13224416448896173No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5940.12528394530533216No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5420.11431632719779466No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5250.11073075973956124No Hit
GGTGGTCGCCGTCTGGATCGTGGTCAGACCTGG5200.10967618107537497No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5190.1094652653425377No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCCGT5070.10693427654849058No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4980.10503603495295524No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGGCT4800.10123955176188457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)