FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449216
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21470.4779437954124519No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11410.2539980766490953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9830.21882568741986036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9530.212147385667474No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7120.1584983615899701No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6750.15026178942869353No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5540.12332597236073516No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5380.11976421142612909No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5040.11219546944009119No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC4730.10529455762929192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG4600.1024006268699245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)