FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483784
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14240.29434623716369285No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC13840.28607808443437566No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6650.13745803912489873No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6340.13105022075967787No Hit
CGGGACGCGCAGACCGGAAACGGAGTCGCGTACCCAGTATA6080.12567592148562168No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5710.11802788021100326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4860.10045805566120418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)