FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483784
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT15220.31460321135052005No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14390.29744679443718686No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11900.2459775436971872No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCATT7310.15110049112827212No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7060.14593289567244885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6380.13187703603260958No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6000.12402229093975825No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5730.11844128784746911No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.1182345840292362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)