FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477168
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA21600.4526707574690675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20150.42228313717600513No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15720.32944371793582133No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA15080.316031251047849No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG13700.28711061932065857No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9230.19343292089997652No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8210.17205680179727056No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7760.162626161016665No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7420.15550078798242967No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7080.14837541494819434No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7080.14837541494819434No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6630.1389447741675888No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6390.13391509908459914No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6390.13391509908459914No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6270.13140026154310433No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6130.12846628441136038No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC6090.1276280052308621No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5550.11631123629413541No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC5040.10562317674278242No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4930.10331790899641216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)