FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507470
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA45470.896013557451672No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT21700.42761148442272445No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC20070.3954913590951189No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16300.3212012532760557No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT13180.25971978639131377No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT12220.24080241196523933No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10360.20414999901472008No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8180.1611917945888427No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACT7270.14325970008079295No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6180.12178059786785425No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6160.12138648590064437No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5560.10956312688434784No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5350.10542495122864406No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5130.10108971958933534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)