FastQCFastQC Report
Sun 21 May 2023
EGAF00007951373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507470
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC47050.9271484028612529No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT37830.7454627859774963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC21840.4303702681931937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15730.309969062210574No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13340.26287268212899284No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG13330.2626756261453879No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13300.2620844581945731No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT12620.248684651309437No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCCCA7660.1509448834413857No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5590.11015429483516266No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5550.10936607090074289No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5420.10680434311387864No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5160.10168088754015016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5130.10108971958933534No Hit
AAACCGCGTGTAACCCGTTCCGCGGACGTTGCC5090.10030149565491556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)