FastQCFastQC Report
Sun 21 May 2023
EGAF00007951374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526772
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG14180.26918666899531485No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13560.2574168710561685No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA13510.25646769380301154No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11720.22248714813999226No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT11710.22229731268936084No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT10080.19135413423644387No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG9880.187557425223816No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9170.17407910822898712No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8610.16344832299362913No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8270.15699391767216175No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7080.13440349904702603No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7060.13402382814576325No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7000.1328848154419749No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6650.12624057466987615No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6400.12149468840409133No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6120.11617929578641234No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6090.11560978943451815No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5920.11238258677378449No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5790.10991472591557638No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5530.10497900419916018No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5460.10365015604474043No Hit

[OK]Adapter Content

Adapter graph