FastQCFastQC Report
Wed 31 May 2023
EGAF00007951375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526772
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT14170.2689968335446835No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG13690.2598847319143766No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13680.2596948964637452No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13120.24906411122838723No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12760.2422300350056571No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA12190.23140941431966772No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10610.20141541311990765No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10250.19458133689717752No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9960.18907610882886713No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA9790.18584890616813346No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9570.18167252625424282No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9530.18091318445171725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7370.13990872711533645No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7340.13933922076344224No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7100.13478316994828882No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6710.1273795873736645No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6570.12472189106482502No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6480.12301337200914246No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG6430.12206419475598553No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6390.12130485295345993No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6080.11541995398388677No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5980.11352159947757283No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5930.11257242222441587No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5780.10972489046494499No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5670.10763670050799967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5540.10516883964979155No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.1042196623966346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)