FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492670
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30740.6239470639576187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17350.3521627052590984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7030.14269186270728884No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6550.1329490328211582No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6190.12564191040656017No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5880.11934966610510078No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5810.1179288367467067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5060.10270566504962755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)