FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461659
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8680.18801756274652937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7080.1533599474937129No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6680.14469554368050877No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6250.13538130958131434No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5530.11978538271754695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)