FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461659
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12030.2605819446821138No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8700.18845078293718956No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7280.15769214940031495No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6810.14751147491980013No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6700.14512876387116896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6230.13494808939065414No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5450.11805250195490612No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4860.10527250633043005No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4700.10180674480514838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)