FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467023
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC14540.3113337030510275No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12180.26080085991482216No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11310.24217222706376346No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10690.22889664962967562No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10490.22461420529609888No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9780.20941152791190154No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8210.1757943398933243No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6880.14731608507503913No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6110.13082867439076878No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5210.11155767488967352No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5070.10855996385616984No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG4800.10277866400584125No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT4700.1006374418390529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)