FastQCFastQC Report
Sun 21 May 2023
EGAF00007951381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467023
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24320.520745230962929No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24260.5194604976628561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22340.4783490320605195No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC14370.30769362536748723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12290.2631562042982894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11300.24195810484708463No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10810.23146611622982166No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6840.1464595962083238No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5200.11134355267299469No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5180.11091530823963702No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4920.10534813060598727No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4780.10235041957248359No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)