FastQCFastQC Report
Sun 21 May 2023
EGAF00007951384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494766
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12860.2599208514732217No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11810.23869869797035365No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11280.22798656334509648No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8840.17867032091938412No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8210.1659370288176633No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7120.14390641232420984No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6870.13885351863305076No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6740.13622601391364808No Hit
ATAACAGTCCAGGTTGTCACCGTAAGAAACGCCCAGCAGAT6710.135619666670709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)