FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533007
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11470.21519417193395207No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT10620.19924691420562957No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10460.1962450774567689No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT9490.1780464421668008No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC9240.17335607224670596No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8860.16622670996816177No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8810.1652886359841428No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8720.16360010281290865No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8380.15722119972157966No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8240.15459459256632652No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7750.14540146752294061No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT7710.14465100833572542No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7510.14089871239964954No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7320.13733403126037744No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAG7310.13714641646357364No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6690.1255142990617384No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA6440.12082392914164355No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6360.11932301076721319No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGG5920.11106795970784625No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5840.10956704133341588No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5480.10281290864847929No Hit

[OK]Adapter Content

Adapter graph