FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533007
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20220.3793571191372721No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG16810.31538047342717823No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG14120.26491209308695757No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12970.2433363914545212No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG12570.23583179958236947No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10780.20224875095449027No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10690.2005602177832561No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG9700.1819863528996805No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC9240.17335607224670596No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9170.1720427686690794No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8560.16059826606404792No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7970.14952899305262407No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7820.14671477110056716No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7640.14333770475809887No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7090.13301889093389016No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6810.12776567662338392No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6800.12757806182658013No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC6340.11894778117360559No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6170.1157583296279411No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5740.10769089336537795No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGGAC5610.10525190100692862No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC5570.10450144181971344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5540.10393859742930205No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG5370.10074914588363755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)