FastQCFastQC Report
Wed 31 May 2023
EGAF00007951388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519658
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11090.21340958861405002No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC10280.19782241397226638No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT9800.1885855697400983No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT9420.18127306805629856No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC8910.17145892105962No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8740.16818753872739378No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8640.16626319617902544No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8290.1595279972597362No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7770.14952141600822078No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7690.1479819419695261No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7680.14778950771468927No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7360.14163161155991055No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7140.13739805795350019No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGT6690.1287385164858426No Hit
CGCCGGAACTTCTTTAGAGTGAGCTGGACCGGATGCTTTAG6680.12854608223100578No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6430.1237352258600849No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6120.117769763960143No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5880.11315134184405896No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCA5770.1110345650408538No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGG5700.10968752525699595No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5250.10102798378933837No Hit

[OK]Adapter Content

Adapter graph