FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519658
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24830.47781425475986133No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19010.3658175184448233No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG16500.3175165204807777No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG13150.253051045110438No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12270.23611683068479652No Hit
CGTGACACCACTCACATTTCCCAGAGCGCACTG11620.2236086041204023No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10790.20763656096894498No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT10600.2039803101270451No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC8940.1720362238241305No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8650.16645563043386227No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8630.1660707619241886No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG8430.1622220768274519No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7710.14836681047919978No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7580.14586516516632092No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7260.1397072690115422No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6880.13239476732774247No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6600.12700660819231108No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6400.12315792309557438No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6020.11584542141177467No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGGAC5780.11122699929569063No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGGAC5770.1110345650408538No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5440.10468423463123823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)