FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461915
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT14900.32257016983644177No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13900.30092116514943223No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11140.24116991221328601No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10940.23684011127588409No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT8710.1885628308238529No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT8660.18748038058950242No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8450.1829340896052304No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG8400.18185163937087995No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8140.17622289815225747No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7940.17189309721485554No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7890.17081064698050508No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7430.1608521048244807No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7050.15262548304341708No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7030.1521925029496769No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7010.1517595228559367No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6830.14786270201227497No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6560.14201747074678242No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG6470.14006906032495156No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6310.13660521957503002No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6210.1344403191063291No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG6180.1337908489657188No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6170.1335743589188487No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6000.12989402812205708No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5810.12578071723152529No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5720.12383230680969443No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5630.12188389638786357No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5090.11019343385687842No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5000.10824502343504756No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4830.10456469263825595No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG4720.10218330212268491No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4690.10153383198207462No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGG4660.10088436184146435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)