FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461915
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18310.3963932758191442No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16690.3613218882261888No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13930.3015706352900425No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT13780.2983232845869911No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12260.26541679746273666No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC11000.23813905155710466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10070.2180054771981858No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9790.21194375588582315No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG9190.19895435307361745No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC8800.19051124124568375No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG8700.18834634077698278No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8530.18466600998019117No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8470.1833670696989706No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8080.17492395787103687No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7980.1727590574023359No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG7540.16323349534005174No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7330.15868720435577974No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6890.14916164229349554No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6870.14872866219975536No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6820.1476462119654049No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6760.14634727168418432No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6420.13898661009060106No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC6220.1346568091531992No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6200.134223829059459No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT5980.1294610480283169No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5890.12751263760648604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5700.12339932671595424No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5620.12166740634099348No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5310.11495621488802053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5170.11192535423183919No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5070.10976045376313824No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT5060.10954396371626815No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4860.10521416277886624No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGTTC4860.10521416277886624No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4810.10413171254451577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)