FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505109
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16710.3308196844641454No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15360.3040927799742234No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13920.27558408185163996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12790.25321267290822375No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11670.23103924103510332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11190.22153634166090885No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11060.2189626397470645No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8870.17560566135230218No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8410.16649871611869915No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8320.16471692248603767No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8270.16372703713455908No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7840.15521402311184318No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG7800.1544221148306603No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7490.14828482565149306No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7480.14808684858119733No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7460.14769089444060587No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7150.14155360526143862No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6950.13759406385552425No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6880.13620822436345423No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC6880.13620822436345423No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6860.1358122702228628No Hit
TGCGCTCAGAGTGGTCGGTGGCGTGGTGGTGCTGGAACAAC6550.12967498104369551No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6390.12650734791896404No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5480.10849143452205366No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5470.10829345745175793No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5180.10255212241318211No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAG5120.1013642599914078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)