FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505109
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG38050.7533027524752083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16970.335967088291834No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14370.28449305001494724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13040.2581620996656167No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11890.23539473658160914No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10940.21658691490351586No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10040.19876897857690123No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9520.18847417092152388No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9360.18530653779679238No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8720.17263600529786638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8300.16432096834544624No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8230.1629351288533762No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8220.16273715178308049No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8190.16214322057219333No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7900.1564018855336175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7740.15323425240888602No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7650.15145245877622454No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG7580.15006661928415452No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7460.14769089444060587No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG7320.14491921545646583No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7200.1425434906129172No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7040.1393758574881857No Hit
TGCCCACAGTCTGGCGGTAACACCAACCTGGGT6710.13284261416842702No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC6310.12492353135659828No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5530.10948131987353225No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGGTA5370.10631368674880075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5300.10492784725673071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)