FastQCFastQC Report
Sun 21 May 2023
EGAF00007951396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535257
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15340.2865913010012013No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9400.17561657297335673No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8720.1629123953540075No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC8420.157307611110177No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8100.1513291745834244No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT7950.14852678246150913No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7780.14535073805667184No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7770.14516391191521083No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7610.14217469365183452No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT6880.12853638532518025No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6230.11639268613021407No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6180.115458555422909No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6100.11396394629122086No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT6050.11302981558391575No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTT5810.10854598818885133No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5520.10312803008648182No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5390.10069929024748858No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)