FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535257
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18710.3495517106735643No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15280.2854703441524352No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT13360.24959972499191976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT10510.19635427467552968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10210.19074949043169914No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC10180.1901890120073161No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA9090.16982496258806518No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA8840.16515430905153974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8150.1522633052907295No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG7980.1490872608858922No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7620.14236151979329556No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC7110.13283338657878366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6410.11975555667651241No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6320.11807412140336325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6280.11732681683751917No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6210.11601903384729205No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC6110.11415077243268187No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6090.11377712014975984No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC5920.11060107574492252No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5740.10723820519862422No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5620.10499629150109199No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC5550.10368850851086489No Hit

[OK]Adapter Content

Adapter graph