FastQCFastQC Report
Wed 31 May 2023
EGAF00007951398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517969
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA22270.42994851043209154No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20590.39751413694641957No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14100.27221706318331795No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC12860.24827740656294103No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11390.2198973297629781No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11330.21873895928134693No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8610.1662261641140686No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG8100.1563800150202039No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6970.13456403761615077No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6370.12298033279983936No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6290.12143583882433119No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6220.12008440659576151No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5280.10193660238354034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)