FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517969
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG51180.9880900208313624No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29070.5612304983502874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16100.3108294125710226No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15440.29808733727308007No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11200.21622915657114614No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG8040.1552216445385728No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC7060.13630159333859748No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7020.1355293463508434No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC6710.12954443219574918No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6220.12008440659576151No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC6060.11699541864474514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5930.11448561593454434No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5640.10888682527332716No Hit

[OK]Adapter Content

Adapter graph