FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences581059
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13540.2330228083550896No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG12710.2187385446228352No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12590.2166733498663647No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11450.1970539996798948No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11050.19017001715832643No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG10630.18294183551067963No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10410.17915564512381701No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG8550.14714512639852406No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7890.13578655523793626No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7770.13372136048146574No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7630.1313119665989168No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7510.1292467718424463No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7280.12528848189254446No Hit
CGGCAGACGGGCGGTGGTCTGACGGAACACGTTGTCATCAGTTT7180.12356748626215239No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6610.11375781116891744No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6490.11169261641244693No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6290.10825062515166274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)