FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549488
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13070.2378577876131963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12430.22621058148676584No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11690.2127434994030807No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG11620.21146958623300235No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11320.2060099583612381No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG10020.1823515709169263No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9470.17234225315202514No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG8440.1535975307923012No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7940.14449815100602742No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7570.13776460996418483No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7120.12957516815653847No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7050.1283012549864601No Hit
CGGCAGACGGGCGGTGGTCTGACGGAACACGTTGTCATCAGTTT6990.12720932941210727No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6510.11847392481728444No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6360.11574411088140232No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6340.11538013568995137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)