FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549488
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG94661.7226945811373497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28190.513023032350115No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14490.26370002620621374No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13220.2405876015490784No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG11840.2154733133389628No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG11210.20400809480825788No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9370.1705223771947704No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG8920.162332935387124No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8900.16196896019567306No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7740.14085839909151793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6980.12702734181638178No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6930.1261174038377544No Hit
ATCGAGAAATATGACCTGGTGGCTGTTCCGG6890.12538945345485253No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6700.1219316891360685No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6590.11992982558308826No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6200.11283230934979471No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6190.11265032175406924No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5740.10446087994642286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5560.10118510322336428No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)