FastQCFastQC Report
Wed 31 May 2023
EGAF00007951413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563786
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22170.39323431230998995No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19070.33824891004742935No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9290.16477883452231876No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8480.15041168102790775No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6450.1144051111591987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)