FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540831
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG79811.4756920368839803No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21040.38903095421675166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14700.27180394614953657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13820.2555326895092922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9530.1762103133881009No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.16659547991886559No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9000.16641057927522646No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8580.15864475224238256No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7980.14755071362403413No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7630.14107919109666422No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.10983098232164945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)