FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007951420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518742
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12180.23479880171646017No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10800.20819598181755092No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9560.18429199871998025No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8870.17099058877052561No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7180.1384117730972237No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6270.12086933388852261No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5560.10718237582459103No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5250.10120638005019836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)