FastQCFastQC Report
Sun 21 May 2023
EGAF00007951421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518742
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17430.33600518176665856No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16210.31248674678356486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10690.2060754671879277No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10370.19990669735629657No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.18679806146408043No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7800.150363764646009No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6830.1316646810938771No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.11277282348450676No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5430.10467631308049088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)