FastQCFastQC Report
Sun 21 May 2023
EGAF00007951425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543137
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG79851.4701631448419092No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28300.521047175942718No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23520.4330399144230645No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17550.32312289532843463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16630.30618425922004944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12760.23493151819890748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10890.20050189915251584No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10600.19516254646617703No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9630.1773033323084231No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9230.16993870791347304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9160.16864989864435678No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8880.16349466156789172No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8800.16202173668890169No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6930.12759211764251008No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6870.12648742398326757No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6350.11691341226983247No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6270.11544048739084245No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6020.11083759714399866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)