FastQCFastQC Report
Wed 31 May 2023
EGAF00007951431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502251
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50731.0100527425530264No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26880.5351905720446549No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21540.42886923072328376No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13400.2667988714805944No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13330.26540514603256143No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9940.1979090136206797No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9650.1921350081931146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9250.18417086277578343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8490.1690389864828542No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8130.16187125560725613No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7600.15131876292929233No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7520.14972593384582608No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7320.1457438611371605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5840.11627652309303516No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5780.11508190128043548No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5570.11090072493633661No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5410.10771506676940414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)