FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471192
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG77641.6477359547700303No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47811.014660690334301No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18890.40089814767653104No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12990.2756837976875669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11210.23790726497903192No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8870.18824598040713764No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8450.17933241650961815No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8090.1716922188831729No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8020.17020662490025296No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7560.16044415015535068No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7430.15768518990135655No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6840.14516375490246014No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6750.14325370549584882No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.11035841015976501No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5020.10653831134654239No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4930.10462826193993106No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4740.10059593541486274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)