FastQCFastQC Report
Wed 31 May 2023
EGAF00007951435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473338
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG78161.651251325691155No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42770.903582640734528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28570.6035855984518462No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13260.28013808314565913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11720.24760319264457956No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10620.22436398514380845No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7710.16288571802813212No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7020.1483083969594666No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.12781564125424116No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5160.10901300973088998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)