FastQCFastQC Report
Wed 31 May 2023
EGAF00007951439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584456
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50000.8554963932272062No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24290.4156001478297767No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20460.35006912410857277No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18710.32012675034562055No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15610.26708597396553374No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15130.25887320859055263No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12900.22071806945261918No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11430.1955664754917393No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11320.1936843834266395No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10630.18187853320010403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6650.11378102029921842No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6220.10642375131746445No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6080.10402836141642827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)