FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434832
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15830.3640486440740332No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9200.2115759649703794No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8650.1989274018471502No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7070.1625915296022372No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6120.14074401148029583No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5970.1372944033557788No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5060.11636678073370865No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4430.10187842661073702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)