FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434832
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58501.3453471685616514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.35829929719983805No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11210.2578007138389079No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9010.2072064613459911No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7890.1814493873495971No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6860.1577620782279133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5930.13637450785590757No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.12832542223203444No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4720.10854766898480332No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4540.10440813923538285No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4520.10394819148544725No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4380.100728557235898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)