FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459183
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6730.1465646594059449No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6410.13959576029600398No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4780.10409793045474244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)