FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459183
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27350.5956230958027627No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12690.2763604053285945No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8760.1907736131346326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6650.14482243462845967No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4880.10627571142659897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)